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How to transfer files with Putty session?

Hi everyone,
I've installed OpenNMT software with an Amazon AMI on an AWS EC2 P2 GPU server.
I’m trying to figure out how to upload, download and edit files through Putty with WinSCP.
I can’t see the data folder with WinSCP but I’m able to see it with Putty. I’m using the Amazon AMI.

How to use the data folder with WinSCP?
How to download, upload, and edit data folder from Putty?
How can I copy files from host directory to opennmt container?

I'm not sure this is a WinSCP-related issue but any help would be greatly appreciated. Tamatoa