I upgraded to the latest Beta Release and that fixed the problem. It wasn't until I checked it in FileZilla and it worked that I said wait let me try to upgrade the client.
I have two servers, both connecting to the same ftp server internally. Originally dir did not work from regular windows command line ftp or from winscp. Then I asked the network guys and they said it was ACKing but not routing. So they fixed that. Now I can connect to the server and when I do a dir I see the directory but only from command line ftp. If I use winscp /console, same thing, if I put it in Passive Mode and use the Windows Client same thing. Can log in but dir does not work, but only on one box. When I do dir I get this:
Active session:  email@example.com
D--------- 0 0 ..
from command line:
200 PORT command successful.
150 ASCII mode data connection for /bin/ls (192.168.0.000,53600).
dr-xr-xr-x 3 root root 1 Apr 26 2011 .
dr-xr-xr-x 3 root root 1 Apr 26 2011 ..
d--------- 3 root root 0 Apr 11 09:34 rlm
226 ASCII transfer complete.
ftp: 219 bytes received in 0.02Seconds 11.53Kbytes/sec.