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CR/LF not converted to LF

I have a problem on WinSCP version 5.17.7 (Build 10640). When I uploaded a cgi script to a Unix server CR/LF is not converted to LF. i.e. CR is not removed so the script won't run.
In the "Advanced Site Settings" window it says that the server has only LF for the end-of-line character.
In the "Transfer settings" window for the "Default" mode it had 'Binary' selected. I switched it to "Automatic" and it works now. I'm not sure how it got changed.
You should update the software so that if the user changes the "Default" mode to anything besides "Automatic" it will give a warning.

Thank You