For anyone than might find this thread.
Found a solution to the disconnect problem.
The Windows 7 firewall is messing with the FTPS traffic.
Run
netsh advfirewall set global StatefulFTP disable
as an administrator and all disconnect problems are gone.
This only disables some parameters for FTP, not the complete firewall (although that is an option too).
For further information, see:
Although the disconnect problem is solved, I still would like to have a reconnect during the compare directory phase.
Thanks, JH