Synchronization is done via scripting: synchronize command with switches: -mirror -delete -permissions=755
I am using WinSCP v. 5.1.4 on Windows XP machine.
put D:\GIO3\sip\css_sip\naglowek.inc /incoming/htdocs/css_sip/naglowek.inc -resume -permissions=755
-resume, unless you really want to resume a previously interrupted download, and you are sure that neither the source nor the destination file has changed since the interrupted transfer.
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